Matthew C. Zwier: search on Z-Library

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1

Hybrid molecular dynamics-quantum mechanics simulations of solute spectral properties in the condensed phase: Evaluation of simulation parameters

Matthew C. Zwier, Justin M. Shorb, Brent P. Krueger

Journal:

Journal of Computational Chemistry

Year:

2007

Language:

english

File:

PDF, 369 KB

english, 2007

2

Reaching biological timescales with all-atom molecular dynamics simulations

Matthew C Zwier, Lillian T Chong

Journal:

Current Opinion in Pharmacology

Year:

2010

Language:

english

File:

PDF, 236 KB

english, 2010

3

Simulations of the Alternating Access Mechanism of the Sodium Symporter Mhp1

Adelman, Joshua L., Dale, Amy L., Zwier, Matthew C., Bhatt, Divesh, Chong, Lillian T., Zuckerman, Daniel M., Grabe, Michael

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 850 KB

english, 2011

4

Equilibrium Sampling using a Weighted Ensemble of Dynamical Trajectories

Stringer, Carsen, Zwier, Matthew, Chong, Lillian, Zuckerman, Daniel

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 35 KB

english, 2012

5

Fretting about FRET: Correlation between κ and R

VanBeek, Darren B., Zwier, Matthew C., Shorb, Justin M., Krueger, Brent P.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 711 KB

english, 2007

6

Insight into the Alternating Access Mechanism of the Sodium Symporter Mhp1 using Path Sampling Simulations

Adelman, Joshua L., Dale, Amy L., Zwier, Matthew C., Bhatt, Divesh, Chong, Lillian T., Zuckerman, Daniel M., Grabe, Michael

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 51 KB

english, 2012

7

Direct Observations of Conformational Distributions of Intrinsically Disordered p53 Peptides Using UV Raman and Explicit Solvent Simulations

Xiong, Kan, Zwier, Matthew C., Myshakina, Nataliya S., Burger, Virginia M., Asher, Sanford A., Chong, Lillian T.

Journal:

Journal of Physical Chemistry A

Year:

2011

Language:

english

File:

PDF, 2.43 MB

english, 2011

8

Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories

Suárez, Ernesto, Lettieri, Steven, Zwier, Matthew C., Stringer, Carsen A., Subramanian, Sundar Raman, Chong, Lillian T., Zuckerman, Daniel M.

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

9

Efficient Explicit-Solvent Molecular Dynamics Simulations of Molecular Association Kinetics: Methane/Methane, Na + /Cl − , Methane/Benzene, and K + /18-Crown-6 Ether

Zwier, Matthew C., Kaus, Joseph W., Chong, Lillian T.

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 1.61 MB

english, 2011

10

WESTPA: An Interoperable, Highly Scalable Software Package for Weighted Ensemble Simulation and Analysis

Zwier, Matthew C., Adelman, Joshua L., Kaus, Joseph W., Pratt, Adam J., Wong, Kim F., Rego, Nicholas B., Suárez, Ernesto, Lettieri, Steven, Wang, David W., Grabe, Michael, Zuckerman, Daniel M., Chong,

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 2.68 MB

english, 2015

11

Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein–Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide

Zwier, Matthew C., Pratt, Adam J., Adelman, Joshua L., Kaus, Joseph W., Zuckerman, Daniel M., Chong, Lillian T.

Journal:

The Journal of Physical Chemistry Letters

Year:

2016

Language:

english

File:

PDF, 4.04 MB

english, 2016

12

Conformation-specific spectroscopy of capped, gas-phase Aib oligomers: tests of the Aib residue as a 3 10 -helix former

Gord, Joseph R., Hewett, Daniel M., Hernandez-Castillo, Alicia O., Blodgett, Karl N., Rotondaro, Matthew C., Varuolo, Adalgisa, Kubasik, Matthew A., Zwier, Timothy S.

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 3.41 MB

english, 2016

13

Flexibility vs. Preorganization: Direct Comparison of Binding Kinetics for a Disordered Peptide and Its Exact Preorganized Analogues

Saglam, Ali S., Wang, David, Zwier, Matthew C., Chong, Lillian T.

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 14.91 MB

english, 2017

14

Impact of Donor Milk on Short- and Long-Term Growth of Very Low Birth Weight Infants

Hoban, Rebecca, Schoeny, Michael, Esquerra-Zwiers, Anita, Kaenkumchorn, Tanyaporn, Casini, Gina, Tobin, Grace, Siegel, Alan, Patra, Kousiki, Hamilton, Matthew, Wicks, Jennifer, Meier, Paula, Patel, Al

Journal:

Year:

2019

File:

PDF, 665 KB

2019

15

Impact of Donor Milk on Short- and Long-Term Growth of Very Low Birth Weight Infants

Hoban, Rebecca, Schoeny, Michael, Esquerra-Zwiers, Anita, Kaenkumchorn, Tanyaporn, Casini, Gina, Tobin, Grace, Siegel, Alan, Patra, Kousiki, Hamilton, Matthew, Wicks, Jennifer, Meier, Paula, Patel, Al

Journal:

Year:

2019

Language:

english

File:

PDF, 665 KB

english, 2019

16

Insights into the photoprotection mechanism of the UV filter homosalate

Holt, Emily L., Krokidi, Konstantina M., Turner, Matthew A. P., Mishra, Piyush, Zwier, Timothy S., Rodrigues, NatÃ©rcia d. N., Stavros, Vasilios G.

Journal:

Physical Chemistry Chemical Physics

Year:

2020

File:

PDF, 3.31 MB

2020